SMRT Flow DocsΒΆ
- Introduction
- SMRT Link System High Level Architecture
- smrtflow Tools
- SMRT Link System Config
- PacBio Parameter “Chemistry” Upgrade Bundle and Services
- Requirements
- Example PacBio Data Bundle
- PacBio Data Bundle Model
- SMRT Bundle Server
- Servers
- Legacy API
- Building a Stand Alone Chemistry Update Bundle Server
- Configuration
- Details of the Root Bundle Dir
- Building and Starting up the Chemistry Bundle Upgrade Server
- Getting a List of PacBio Data Bundles from SMRT Link Server
- Bundles Stored within the SL System install
- SMRT Link PartNumbers and Automation Constraints WebService
- SMRT Link Periodic Checking for Chemistry Data Bundle Upgrades
- SMRT Link Analysis Server APIs
- SMRT Eve Server
- Logging in smrtflow
- PacBio Update Server
- Web Services CookBook
- How to get the reports for SMRT Link Job By Id
- How to get the SMRT Link reports for dataset by UUID
- How to get QC reports for a particular SMRT Link Run
- How to get QC reports for a particular Collection
- How to get recent Runs
- How to setup a Run in Run Design
- How to monitor progress of a SMRT Link Run
- How to capture Run level summary metrics
- How to setup a job on a particular Collection
- How to delete a SMRT Link Job
- How to setup a SMRT Link Analysis Job for a specific Pipeline
- Querying Job History
- How to get the reports for SMRT Link Job By Id
- Disclaimer